FastQCFastQC Report
Wed 8 May 2024
EGAF00007961739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436593
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21670.4963432762320971No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13120.3005087117750399No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9680.22171679344377945No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6260.14338296766095654No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5620.1287240061109546No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5450.12483021944923534No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5220.11956215514220336No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4850.1110874429961085No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4730.10833888770548314No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)