FastQCFastQC Report
Wed 8 May 2024
EGAF00007961741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457944
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21280.4646856384186712No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15360.3354121901367853No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8030.17534895096343658No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7920.1729469105392799No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7060.1541673217686005No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6140.13407752913019932No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6070.13254895795119054No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC5960.1301469175270339No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5930.12949181559317297No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5590.122067327009416No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5580.12184895969812902No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5540.12097549045298114No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5470.11944691927397236No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5060.11049385951120662No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5060.11049385951120662No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4650.10154079974844085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)