FastQCFastQC Report
Wed 8 May 2024
EGAF00007961743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439096
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22300.5078616065735055No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20120.4582141490699073No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15200.3461657587406854No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7220.16442873540182557No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7020.15987392278681656No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6260.14256563484978227No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5980.13618889718876964No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC5820.13254504709676243No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5500.125257346912748No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5360.1220689780822417No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5290.12047479366698854No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5240.11933609051323628No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5000.11387031537522546No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4820.10977098402171735No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4820.10977098402171735No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4770.10863228086796509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)