FastQCFastQC Report
Wed 8 May 2024
EGAF00007961745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460732
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21810.47337714766936095No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15620.33902572428222916No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8060.17493901009697613No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7840.17016399989581796No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6740.1462889488900272No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6560.14238212236180686No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5970.12957641318597363No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5950.1291423213495047No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5780.12545254073951886No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5770.1252354948212844No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5710.12393321931187763No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC5430.11785593360131269No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5190.11264683156368561No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5060.10982523462663761No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4850.10526727034371391No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4630.10049226014255577No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4620.10027521422432131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)