FastQCFastQC Report
Wed 8 May 2024
EGAF00007961747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441978
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21880.4950472647959853No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21430.48486576254926717No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15110.34187221988424765No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7690.17399056061613927No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7590.171728004561313No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6730.15227002248980717No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6450.14593486553629365No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5710.12919195073057937No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5630.12738190588671836No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC5550.12557186104285734No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5460.1235355605935137No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5360.12127300453868743No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4870.11018647987003878No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4810.10882894623714304No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4800.10860269063166039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)