FastQCFastQC Report
Wed 8 May 2024
EGAF00007961748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451147
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG20210.4479692871724737No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG18950.4200404746124878No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC17520.388343488929329No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT16790.3721625102239403No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15700.348001870787127No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14760.3271660899884073No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14350.3180781430442849No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG14270.31630488510396837No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11300.2504726840697157No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC10270.2276419880881398No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9650.21389923905068636No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9550.21168266662529067No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG8950.1983832320729164No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8770.1943934017072041No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8650.19173351479672923No Hit
TTTACGGGATGCTGCGGAGGTAGGCGCCACAGCCGGGTCCGGTT8580.19018191409895221No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8120.17998568094213196No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7920.17555253609134053No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7860.1742225926361031No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG7110.15759829944563525No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6960.15427344080754166No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG6930.15360846907992295No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6240.1383141193446925No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5720.1267879427326348No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5620.1245713703072391No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4780.1059521619339151No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4780.1059521619339151No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4760.10550884744883597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)