FastQCFastQC Report
Wed 8 May 2024
EGAF00007961749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451147
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35720.791759670351349No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG29450.6527805792790377No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG23320.5169046896022804No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG19430.4306800222543872No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC17180.3808071426829836No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15840.35110507218268106No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG15580.34534198387665216No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14070.31187174025317693No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC10570.23429170536432695No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10430.23118850396877294No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10020.22210055702465048No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9350.20724952177449923No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA9250.2050329493491035No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC9060.20082146174085166No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9020.19993483277069338No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8960.19860488931545592No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8740.19372842997958536No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8730.19350677273704578No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8550.1895169423713335No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7940.17599585057641967No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC7080.15693332771801652No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6600.1462937800761171No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5850.12966948688564925No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5800.12856120067295138No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5270.11681336681835411No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4960.1099419922996274No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4880.10816873435931082No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4570.1012973598405841No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)