FastQCFastQC Report
Wed 8 May 2024
EGAF00007961750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434472
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG19440.44743965088659343No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG18070.41590712404942093No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC16870.3882873925132114No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16220.3733267045977646No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT15880.3655011139958386No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14680.3378813824596291No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG14090.32430168112099284No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13670.31463477508331955No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10380.23891067778821193No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC9900.2278627851737281No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9410.21658472812977592No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8820.2030050267911396No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG8730.20093354692592388No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8480.19517943618921357No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8180.1882745033051612No Hit
TTTACGGGATGCTGCGGAGGTAGGCGCCACAGCCGGGTCCGGTT7930.1825203925684509No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7680.1767662818317406No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG7600.1749249663959933No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7420.17078200666556187No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7210.16594855364672523No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG6930.1595039496216097No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6610.15213868787862048No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6080.13993997311679465No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5600.12889208050231085No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5310.1222173120477269No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4990.1148520503047377No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4810.11070909057430628No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4550.10472481540812757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)