FastQCFastQC Report
Wed 8 May 2024
EGAF00007961751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434472
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34720.7991308991143272No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG28630.6589607615680643No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG22550.5190207884512696No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21240.4888692481909076No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG18420.4239628790808153No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16490.3795411441934118No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC15630.35974700325912834No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG14820.3411036844721869No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13320.3065790200519251No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC10380.23891067778821193No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10320.23752969121140144No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9190.21152111068147086No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9040.20806864423944466No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8800.20254469793220278No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA8730.20093354692592388No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8460.19471910733027675No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC8450.19448894290080834No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8400.19333812075346626No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8340.1919571341766558No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7860.18090924156217203No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7320.16848036237087774No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6960.16019444291001492No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6100.14040030197573147No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5930.13648750667476847No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5420.12474912077187943No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5170.11899501003516913No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4890.11255040601005359No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4700.10817728185015375No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4400.10127234896610139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)