FastQCFastQC Report
Wed 8 May 2024
EGAF00007961752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455333
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG22060.4844805889316171No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG18450.40519795402485653No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC18210.3999270863302242No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT17760.3900442094027887No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16660.3658860658023908No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15360.3373355324564659No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG14430.31691092013976585No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14220.3122989109069626No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11120.24421686985129565No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10290.22598845240735904No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC10050.22071758471272673No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9160.201171450345132No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8760.19238667085407823No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8640.18975123700676208No Hit
TTTACGGGATGCTGCGGAGGTAGGCGCCACAGCCGGGTCCGGTT8420.1849196082866825No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG8340.18316265238847174No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8020.1761348287956287No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7820.1717424390501018No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7630.16756966879185126No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7130.156588694428034No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG6990.15351402160616515No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG6900.15153744622067805No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6160.1352856041622285No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6000.131771692365807No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5650.12408501031113492No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5150.11310403594731767No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5120.11244517748548864No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4840.10629583184175097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)