FastQCFastQC Report
Wed 8 May 2024
EGAF00007961753

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961753
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455333
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35910.7886535788093549No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG30500.6698394361928522No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG23460.5152273171503053No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG20180.4431921253236642No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC17990.39509545761014464No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16800.3689607386242596No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG15260.3351393375837025No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14410.3164716811652131No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11220.2464130647240591No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC10460.22972198369105687No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9380.20600307906521162No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9230.20270878675606643No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9200.20204992829423743No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC9120.20029297239602664No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9050.19875563598509222No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9000.1976575385487105No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA8820.1937043877777363No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8730.1917278123922492No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8630.18953161751948572No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7950.17459749238469427No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6950.15263554365705978No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6130.13462674570039948No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6090.13374826775129411No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5900.12957549749304356No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5560.12210843492564782No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5340.11727680620556823No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5230.11486099184552843No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5210.11442175287097575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)