FastQCFastQC Report
Wed 8 May 2024
EGAF00007961755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432644
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34720.8025073732676289No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG27960.6462588178733555No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22070.5101191741940255No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG22040.5094257634452345No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG18190.42043805068370294No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC16260.3758286258448054No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15960.3688945183568939No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG14680.33930899307513795No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13310.3076432355470086No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10790.24939673264855172No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC10400.24038239291426672No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA9220.21310823679514798No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9110.21056573071624707No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC8990.20779208772108243No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8590.19854661107053373No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8470.19577296807536915No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8440.19507955732657797No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8350.1929993250802045No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8330.19253705124767706No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8280.1913813666663585No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7650.17681974094174424No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6770.15647969231053707No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6120.1414557927533954No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5340.1234271132848254No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5320.12296483945229797No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5320.12296483945229797No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4780.11048344597405718No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4640.10724752914636514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)