FastQCFastQC Report
Wed 8 May 2024
EGAF00007961757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448087
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16380.3655540107166689No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15380.3432369160453216No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14770.3296234882957997No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13540.3021734618500425No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13120.2928002820880766No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12790.28543564084653206No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12770.2849892989531051No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12670.28275758948597035No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12510.2791868543385548No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12130.2707063583634428No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11800.2633417171218982No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11130.2483892636920955No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10020.2236172886069No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10000.22317094671347304No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9650.21535996357850148No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9630.21491362168507455No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9570.2135745960047937No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8980.20040751014869881No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8440.18835627902617125No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8230.18366968914518833No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8080.18032212494448624No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8060.17987578305105928No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7950.17742090263721108No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7730.17251114180951466No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7540.1682708938219587No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7490.1671550390883913No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7470.16670869719496437No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7010.1564428336461446No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7000.15621966269943113No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6950.1551038079658638No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6720.14997087619145388No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6470.14439160252361707No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5920.13211720045437605No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5780.12899280720038742No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5630.12564524299968532No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5370.11984279838513504No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5360.11961962743842156No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5240.11694157607785988No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5130.11448669566401168No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5100.11381718282387125No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5040.11247815714359043No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5010.11180864430345No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT4890.10913059294288831No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4690.10466717400861886No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4650.10377449022176496No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4620.10310497738162455No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4550.10154278075463023No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4510.10065009696777634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)