FastQCFastQC Report
Wed 8 May 2024
EGAF00007961759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431512
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21770.5045050890821112No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15190.35201802035632845No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14890.3450657223901073No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14080.32629451788131036No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12970.3005710154062923No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12780.29616789336101895No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12680.29385046070561194No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12450.2885203655981757No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11540.26743172843397167No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11490.2662730121062682No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11320.26233337659207623No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10980.2544541055636923No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10930.25329538923598877No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9760.2261814271677265No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9420.2183021561393426No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8920.2067149928623074No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8880.2057880198001446No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8510.19721351897513859No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8190.18979773447783607No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8170.18933424794675469No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7950.1842358961048592No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7670.1777470846697195No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7390.1712582732345798No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7230.16755038098592853No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7160.16592817812714364No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7050.1633790022061959No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7040.16314725894065518No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7040.16314725894065518No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7040.16314725894065518No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7010.1624520291440331No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6640.15387752831902704No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6450.1494744062737537No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6190.14344908136969542No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5590.1295444854372532No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5580.12931274217171249No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT5230.12120172787778788No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5170.11981126828454365No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4990.115639889504811No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4990.115639889504811No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4900.11355420011494466No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4760.1103097943973748No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4670.10822410500750848No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4610.10683364541426425No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4540.10521144255547933No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4510.10451621275885722No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4410.1021987801034502No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4380.10150355030682809No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4380.10150355030682809No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)