FastQCFastQC Report
Wed 8 May 2024
EGAF00007961761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450601
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16160.35863213796684873No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14790.3282282995377285No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14700.32623096708618043No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14020.3111400107855952No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13260.29427364786141175No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13070.2900570571303659No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12780.2836212081198222No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12230.27141528758258415No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12230.27141528758258415No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11940.2649794385720404No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11690.25943129287329586No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11580.25699010876584827No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10140.22503278954107958No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9650.21415842397154022No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9510.21105146238024328No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9410.20883220410074543No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9250.2052813908535489No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9040.2006209484666035No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9040.2006209484666035No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8800.1952947285958087No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8180.1815353272629222No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8140.18064762395112305No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7930.1759871815641776No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7880.1748775524244287No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7620.16910748089773436No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7580.16821977758593523No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7560.16777592593003565No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7070.15690156036049632No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6980.15490422790894826No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6900.15312882128535No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6880.15268496962945044No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6620.1469148981027561No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6080.13493090339346783No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5740.12738542524317523No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5570.12361268616802891No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5400.11983994709288262No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5360.11895224378108349No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5350.11873031795313371No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5340.11850839212518391No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT5210.11562335636183675No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5150.11429180139413805No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5150.11429180139413805No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5010.11118483980284109No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4980.11051906231899175No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4890.10852172986744371No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4640.10297358416869913No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4620.10252973251279958No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4610.10230780668484979No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)