FastQCFastQC Report
Wed 8 May 2024
EGAF00007961763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433983
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22450.5173013689476316No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15630.3601523561982843No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14610.3366491314175901No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14270.3288147231573587No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13040.30047259915710983No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12760.2940207335310369No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12710.2928686146692382No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12690.2924077671245187No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12190.28088657850653137No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12000.27650852683169613No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11970.27581725551461694No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11300.2603788627665139No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11160.25715292995347744No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10070.23203673876626504No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9560.22028512637591793No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9380.21613749847344252No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8670.1997774106359005No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8490.19562978273342502No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8290.1910213072862301No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8280.19079088351387036No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8190.18871706956263265No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8150.18779537447319364No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7870.18134350884712072No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7620.17558291453812705No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7600.17512206699340757No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7580.1746612194486881No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7240.1668268111884567No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6970.16060536933474354No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6710.1546143512533901No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6610.15231011352979265No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6530.15046672335091466No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6340.14608867167607947No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6020.13871511096056757No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5780.13318494042393367No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5590.12880688874909846No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5450.12558095593606203No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5250.12097248048886708No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT5130.11820739522055011No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5030.11590315749695265No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4980.11475103863515392No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4940.11382934354571492No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4910.11313807222863567No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4880.11244680091155644No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4710.10852959678144074No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4640.10691663037492252No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4580.10553408774076403No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4510.1039211213342458No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC4500.10369069756188606No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4410.10161688361064833No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4370.10069518852120936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)