FastQCFastQC Report
Wed 8 May 2024
EGAF00007961765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428903
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24760.577286705851906No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18340.42760251152358464No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14790.3448332140367402No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14680.3422685315794014No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14360.33480763715805206No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13770.3210516130686892No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13350.31125918914066814No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12050.28094930555393643No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11300.2634628342538989No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10570.24644266885519567No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9460.22056269133114015No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8830.20587405543910864No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7930.18489028987906356No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7850.18302506627372622No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7160.1669375126776917No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6150.14338906466030782No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5740.13382979368295395No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5710.13313033483095246No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5690.13266402892961812No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5310.12380421680426576No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4670.10888242796156707No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4640.10818296910956555No Hit
CAGCCGCAGCAGCAACAGCCTCAGCAACAGC4630.10794981615889841No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4520.10538513370155955No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4460.10398621599755654No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4380.10212099239221921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)