FastQCFastQC Report
Wed 8 May 2024
EGAF00007961767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412050
Total Bases12.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23050.5593981312947458No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20580.49945394976337826No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17890.43417061036282006No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15710.381264409659022No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15020.3645188690692877No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14090.3419487926222546No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12940.3140395583060308No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12710.30845771144278605No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10940.2655017594952069No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10930.26525907050115277No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10480.25433806576871737No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8820.21405169275573355No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8800.2135663147676253No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8150.19779153015410753No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7040.17085305181410024No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6670.1618735590340978No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6090.14779759737895887No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5900.1431865064919306No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5830.14148768353355176No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5130.12449945394976338No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4560.11066618128867856No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4340.10532702341948792No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4270.1036282004611091No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4220.10241475549083849No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)