FastQCFastQC Report
Wed 8 May 2024
EGAF00007961769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431379
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26100.6050364065010119No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19110.4429979206220052No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15690.3637172880460106No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15120.35050384928334477No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14780.34262214896877224No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13750.31874523330992005No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12740.2953319470813368No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11670.27052777256194666No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11270.2612551839565672No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10480.2429418214609427No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9750.2260193472561251No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9580.22207849709883887No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8060.18684266039839678No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7730.1791927747989587No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6770.1569385621460479No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6700.15531585914010648No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6070.14071153208663378No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5890.13653886721421302No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5230.12123909601533685No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5050.1170664311429161No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4990.11567554285210917No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4700.10895291611320904No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4570.10593932481646069No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4460.10338936294998133No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4380.10153484522890543No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4330.10037577165323301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)