FastQCFastQC Report
Wed 8 May 2024
EGAF00007961771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414437
Total Bases12.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22200.5356664583519329No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20940.5052637674724988No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18950.4572468191787895No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14870.35880001061681266No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14400.3474593243363889No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13810.3332231436864952No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13020.31416113908748494No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12740.30740498555872187No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11390.27483067390218535No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10910.26324869642430576No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9980.24080861506091394No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9590.23139825836013678No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8470.20437364424508428No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8260.19930652909851196No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7220.1742122445631061No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7090.17107545899618037No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6440.1553915311615517No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6010.14501600967095118No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5780.1394663121294672No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5470.13198628500833662No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5070.12233463711010359No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4740.11437202759406134No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4540.10954620364494483No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4270.10303134131363753No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4180.1008597205365351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)