FastQCFastQC Report
Wed 8 May 2024
EGAF00007961772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437168
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14140.32344544888921417No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC12570.28753248179189694No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12310.2815851114445705No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12000.27449401603045054No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10430.23858104893313328No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8600.19672071148848952No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8460.19351828130146764No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6360.14548182849613878No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5840.13358708780148593No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5420.12397979724042016No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5360.1226073271602679No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4780.10934011638546279No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4430.10133404091790799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)