FastQCFastQC Report
Wed 8 May 2024
EGAF00007961773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437168
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29570.6763990045017019No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13600.31109321816784397No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12910.29530981224609304No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11930.2728928009369396No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11900.27220656589686343No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10290.23537861874611135No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9130.2088441971965011No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6020.13770449804194268No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5640.12901218753431176No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5560.1271822274274421No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5350.12237858214690919No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5180.11848991691981116No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4990.11414376166599567No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4580.10476521611828864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)