FastQCFastQC Report
Wed 8 May 2024
EGAF00007961775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420097
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29060.6917450017495959No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21100.5022649530941664No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12650.30112093159436987No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11970.2849341937695342No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11180.2661290130612692No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10860.25851172467311123No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9630.229232772431129No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8100.19281261232524868No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5530.13163626495785496No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5320.12663741945312632No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5240.1247330973560868No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5220.12425701683182694No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4450.10592791664782181No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4220.10045299061883325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)