FastQCFastQC Report
Wed 8 May 2024
EGAF00007961776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439326
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13840.31502802019457077No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13230.3011431146802147No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12270.27929146010024447No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC11790.2683656328102594No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9740.22170324542594794No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8540.19438867720098513No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7960.18118663589225315No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6130.1395319193491849No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6100.13884905514356083No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5930.1349794913116911No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5440.1238260426198313No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4610.10493346626423203No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4440.1010639024323623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)