FastQCFastQC Report
Wed 8 May 2024
EGAF00007961777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439326
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30140.6860509052503153No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13640.310475592157077No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12840.2922658800071018No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12210.2779257316889963No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11300.2572121841183995No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9860.2244347022484442No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8700.1980306196309802No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6260.14249099757355585No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5680.12928895626482384No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5550.12632987804045287No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5510.1254193924329541No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5420.12337079981608191No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4870.11085162271297397No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4610.10493346626423203No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)