FastQCFastQC Report
Wed 8 May 2024
EGAF00007961779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422941
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29340.6937137804090877No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21020.49699603490794225No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13170.31139095051082777No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12640.29885965181904806No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11330.26788606448653596No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11320.26764962488857785No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9630.22769133283365764No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8710.20593888982151173No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5690.13453413123816324No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5610.13264261445449838No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5490.1298053392790011No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5340.12625874530962947No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4330.1023783459158606No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4250.10048682913219574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)