FastQCFastQC Report
Wed 8 May 2024
EGAF00007961781

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961781
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440500
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41170.9346197502837685No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA19250.4370034052213394No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14680.33325766174801363No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14570.3307604994324631No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10740.2438138479001135No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9950.22587968217934168No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9640.21884222474460838No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9330.21180476730987513No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8840.20068104426787742No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8400.1906923950056754No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8030.1822928490351873No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8000.18161180476730987No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7910.17956867196367765No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7610.17275822928490353No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7310.1659477866061294No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6650.15096481271282633No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6470.14687854710556186No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6200.14074914869466515No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6030.1368898978433598No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5980.13575482406356412No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5690.12917139614074916No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5580.12667423382519863No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5370.12190692395005676No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5240.11895573212258796No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5220.1185017026106697No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5020.11396140749148694No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4930.11191827468785472No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4720.10715096481271283No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4650.10556186152099886No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4560.10351872871736663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)