FastQCFastQC Report
Wed 8 May 2024
EGAF00007961783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424288
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38320.9031601176559317No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22020.5189871030997814No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18620.438852854664756No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14230.3353853985971793No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13490.317944415114262No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10690.25195150463835886No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9780.2305038087336903No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9300.21919073836639263No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9100.2144769590466853No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8560.20174975488347538No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8070.19020099555019232No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7940.18713703899238252No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7360.17346707896523117No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7280.17158156723734821No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7130.1680462327475677No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7030.165689343087714No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6910.1628610754958896No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6020.1418847575231918No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5990.1411776906252357No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5750.13552115544158685No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5550.13080737612187948No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5460.12868617542801117No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5360.12632928576815747No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4870.11478052643487444No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4800.11313070367297685No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4710.11100950297910854No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4540.10700279055735726No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4500.1060600346934158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)