FastQCFastQC Report
Wed 8 May 2024
EGAF00007961785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442834
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39040.8815944575168122No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA20860.47105687458505896No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14830.33488846836512104No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14810.3344368318602456No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11420.2578844442838626No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9690.2188178866121391No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9260.20910770175731763No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9210.20797861049512908No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8850.1998491534073716No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8630.19488115185374205No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7870.17771896466847623No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7650.17275096311484664No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7560.17071859884290727No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7500.16936368932828103No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7240.16349241476490062No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7220.1630407782600252No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6530.14745931884182334No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6300.14226549903575608No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6180.13955568000650356No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6090.1375233157345642No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5950.13436186020043628No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5790.13074876816143297No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5530.12487749359805256No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5470.12352258408342628No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5100.1151673087432311No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5090.11494149049079339No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4760.10748948816034902No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4750.10726366990791132No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4440.10026330408234235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)