FastQCFastQC Report
Wed 8 May 2024
EGAF00007961787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428074
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39590.9248400977401103No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21850.510425767507487No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18760.4382419861986479No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14360.3354560192863851No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13020.30415302027219593No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10930.25532968598887107No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9790.2286987763797848No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9240.21585053051575193No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8770.20487112041376027No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8750.20440391147324996No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8700.20323588912197424No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7750.18104346444773567No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7520.1756705616318674No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7450.1740353303400814No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7240.1691296364647234No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7180.16772800964319254No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6910.16142068894630368No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5940.1387610553315548No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5730.13385536145619684No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5680.13268733910492111No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5670.13245373463466598No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5590.13058489887262484No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5490.1282488541700734No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5260.12287595135420512No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4700.10979410101991713No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4600.10745805631736569No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4550.10629003396608998No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4550.10629003396608998No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4510.10535561608506941No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4470.10442119820404884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)