FastQCFastQC Report
Wed 8 May 2024
EGAF00007961789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495858
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8030.1619415235813479No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7950.16032815846472176No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7410.14943794392749538No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6530.13169092764460794No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6340.12785918549262087No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5710.1151539351991901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)