FastQCFastQC Report
Wed 8 May 2024
EGAF00007961791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476119
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24520.5149973010948944No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8100.17012553584293003No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7060.14828225716680074No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6960.1461819419094806No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5800.12181828492456717No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5080.1066960150718623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)