FastQCFastQC Report
Wed 8 May 2024
EGAF00007961793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497518
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8250.16582314609722662No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7940.15959221575902782No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6950.13969343822736063No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6940.1394924404745155No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6180.12421661125828613No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5600.112558741593269No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5000.1004988764225616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)