FastQCFastQC Report
Wed 8 May 2024
EGAF00007961794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479398
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7440.15519463994426344No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6910.1441391077976963No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6680.13934142403597846No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5290.11034672651950989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)