FastQCFastQC Report
Wed 8 May 2024
EGAF00007961795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479398
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24680.5148123271269384No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7880.16437281757537578No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7690.16040951359830455No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6930.14455629769001957No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6220.1297460565125428No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5450.11368424565809619No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4830.10075135899607424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)