FastQCFastQC Report
Wed 8 May 2024
EGAF00007961797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435302
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31470.7229463682684665No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13660.31380512839362096No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12590.28922449242135345No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11910.27360315367262267No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9580.22007709590123636No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9090.20882054297935684No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9010.20698273842068268No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8220.18883441840377485No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7920.1819426513087466No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7910.18171292573891232No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6970.16011872217449036No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6840.15713228976664476No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6360.1461054624145995No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6130.14082177430841117No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6120.1405920487385769No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6070.13944342088940553No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5820.1337002816435486No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5800.13324083050388005No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5600.12864631910719454No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5330.12244372872166909No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5190.11922757074398922No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5120.11761949175514928No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5030.11555196162664082No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4840.11118717579978957No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4800.11026827352045246No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4760.10934937124111535No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4710.108200743391944No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4670.10728184111260688No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4640.10659266440310405No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4440.10199815300641854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)