FastQCFastQC Report
Wed 8 May 2024
EGAF00007961799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419000
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30360.724582338902148No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20470.4885441527446301No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13230.3157517899761336No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12310.29379474940334127No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11490.2742243436754177No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9240.22052505966587113No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8700.20763723150357993No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8450.20167064439140814No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8090.19307875894988066No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7980.19045346062052507No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7510.179236276849642No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6900.16467780429594273No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6390.15250596658711219No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5890.1405727923627685No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5810.13866348448687352No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5800.13842482100238665No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5680.13556085918854416No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5440.12983293556085918No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5250.12529832935560858No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5250.12529832935560858No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5210.1243436754176611No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5130.12243436754176612No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5000.11933174224343676No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5000.11933174224343676No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4830.1152744630071599No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4610.11002386634844868No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4480.10692124105011933No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4300.1026252983293556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)