FastQCFastQC Report
Wed 8 May 2024
EGAF00007961801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440177
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31410.7135765839650867No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14060.3194169618130888No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12550.2851125797122521No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12020.2730719687761968No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9850.22377361833989506No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9710.22059307960206917No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8410.19105950560797133No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8410.19105950560797133No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7960.18083634537924517No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7890.1792460760103322No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7370.16743264641269306No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7030.1597084809065444No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6590.14971250201623437No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6250.14198833651008572No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6020.13676316572651456No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5970.13562725903443387No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5690.12926618155878206No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5540.12585846148253998No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5520.12540409880570771No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5390.12245074140629791No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5350.12154201605263339No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5340.12131483471421722No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5150.11699838928431064No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4890.11109167448549107No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4870.1106373118086588No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4780.10859267976291356No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4760.10813831708608129No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4610.10473059700983921No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4430.10064133291834876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)