FastQCFastQC Report
Wed 8 May 2024
EGAF00007961803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418119
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30220.7227607451467166No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21490.5139685113568147No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13350.3192870929089565No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11960.28604296862854833No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11080.2649963287963475No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9370.2240988809405935No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8900.21285806193930434No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8610.20592223744914726No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7420.17746144040333015No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7390.17674394131814147No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7120.17028644955144348No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7020.16789478593414794No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6660.15928479691188394No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6220.14876147699578351No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6140.14684814610194705No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6100.14589148065502883No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6040.1444564824846515No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5740.13728149163276482No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5520.13201983167471462No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5030.12030067994996639No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4990.11934401450304818No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4950.11838734905612995No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4860.11623485180056396No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4700.11240819001289107No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4660.11145152456597283No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4440.10618986460792262No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4400.10523319916100439No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4320.10331986826716795No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4310.1030807019054384No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4260.10188487009679062No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4260.10188487009679062No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)