FastQCFastQC Report
Wed 8 May 2024
EGAF00007961805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448574
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13020.29025311319871416No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11900.26528510346119033No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8040.17923464133008155No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7850.17499899682103734No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6190.13799283953149313No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6160.1373240535563809No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6140.13687819623963937No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6050.13487183831430266No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5540.12350247673739449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)