FastQCFastQC Report
Wed 8 May 2024
EGAF00007961806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430920
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8620.20003712986169128No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7370.17102942541539032No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6600.15316067947646894No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5610.1301865775549986No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5260.12206442031003435No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5150.11951174231875986No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5100.11835143414090782No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4630.10744453726909867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)