FastQCFastQC Report
Wed 8 May 2024
EGAF00007961807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430920
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22410.5200501253132832No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11370.26385407964355334No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10420.24180822426436463No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7620.1768309663046505No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7440.17265385686438317No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6190.14364615241808223No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5910.13714842662211083No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5630.13065070082613944No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5300.12299266685231597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)