FastQCFastQC Report
Wed 8 May 2024
EGAF00007961809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450408
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12100.26864531713468676No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11740.2606525638976217No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8320.18472140814550364No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8040.17850482229445302No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6380.14164934903465304No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6360.14120530718814941No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5800.1287721354860482No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5730.12721798902328554No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5340.11855917301646507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)