FastQCFastQC Report
Wed 8 May 2024
EGAF00007961810

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961810
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435169
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8970.20612681509942113No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7170.16476357461124297No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6370.14637991217205268No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5990.13764767251343732No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5390.1238599256840446No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5360.12317053834257495No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4890.11237013665955065No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4680.10754442526926321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)