FastQCFastQC Report
Wed 8 May 2024
EGAF00007961811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435169
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22740.522555604833984No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11770.27046963363658716No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11100.2550733163437653No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7380.16958928600153045No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7360.16912969444055068No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6340.14569052483058306No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5990.13764767251343732No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5460.12546849614747374No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5430.12477910880600411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)