FastQCFastQC Report
Wed 8 May 2024
EGAF00007961813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475694
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7260.15261912069523687No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6770.14231838114418094No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5730.120455586995001No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5150.10826287487334293No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5040.10595046395371814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)