FastQCFastQC Report
Wed 8 May 2024
EGAF00007961815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458557
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22750.4961215290574563No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7380.16093964327226495No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6020.13128138922751154No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4930.1075111709122312No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4590.10009660740104283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)