FastQCFastQC Report
Wed 8 May 2024
EGAF00007961817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478983
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7580.1582519630133011No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6760.14113235751581998No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5840.12192499525035334No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4920.10271763298488673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)