FastQCFastQC Report
Wed 8 May 2024
EGAF00007961821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459477
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22760.4953457953281666No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC20850.45377679405062715No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18920.41177251527279923No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18600.40480807526818535No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17040.37085643024569237No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15770.3432163089773808No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14460.3147056327084925No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14380.312964522707339No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12850.2796657939352786No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12100.2633428876744647No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11630.25311386641768796No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11020.2398379026588926No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10730.2335263789047112No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG10010.21785638889432984No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8850.19261029387760434No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8820.19195737762717177No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8800.1915221001268834No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8730.1899986288758741No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8590.1869516863738555No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8320.1810754401199625No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8070.17563447136635782No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7840.17062878011304156No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7410.1612703138568416No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7330.15952920385568808No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6800.14799435009804623No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6750.14690615634732535No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6510.14168282634386486No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6380.13885352259199046No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6350.1382006063415579No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6110.13297727633809744No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5640.12274825508132071No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5620.12231297758103234No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5380.1170896475775719No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5110.11121340132367886No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5090.1107781238233905No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4930.10729590382108353No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4820.1049018775694975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)