FastQCFastQC Report
Wed 8 May 2024
EGAF00007961823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440312
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21750.49396791366122206No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21470.48760878649684763No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19090.43355620559966573No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17700.40198768146223585No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16760.38063918312469336No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15840.3597449081560348No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15830.3595177964715929No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13990.3177292465342757No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12980.2947909664056397No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12640.28706916913461367No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11640.2643580006904195No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10320.2343792583440833No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10260.23301658823743163No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10230.2323352531841058No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG9210.20916986137102783No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8530.1937262668289758No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8510.19327204346009194No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8350.18963825650902089No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8250.18736713966460145No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8120.1844146877668562No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8020.18214357092243683No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7620.17305910354475917No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7090.1610221842693363No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7060.16034084921601047No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6980.15852395574047493No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6480.1471683715183779No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6330.14376169625174876No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6230.14149057940732934No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6200.14080924435400352No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5500.12491142644306766No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5350.12150475117643854No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5140.11673540580315776No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4710.10696960337215429No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4660.10583404494994457No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4610.10469848652773489No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4540.10310870473664129No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4470.10151892294554771No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4420.100383364523338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)